rs27487619 SNP Detail

Summary

• ID
  rs27487619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129578704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGAGCA TACAGAAGCA
  TCCGGAGGAG TGGGTCGCTC TTGCCTCTGC TGCACATTAA CCATGAACTA TGTGACTTTT
  GGCAATCATT TAACTTGTCT GCTCTTCCCT TTCCTCATAA GTTAGATGAA GGTAAGAGGA
  ACCACAGACA ACCCAGGCCT AAAGAGATCT GAATACATAA CGAAGAAAGA GTCCTCTCAA
  Y
  ATCCACTTTA AAAAAAAAAA AAAATATATA TATATATATA CACACACACA TACACATATA
  TATACATATA CATATTTACT TATTTATTTA TTTTTGTGAG CTGGTGAGAT GGCTCAGTGC
  CTAAGAGCAC AGGCTACTCT TCCAGAGGTC CTGAGTTCAA TTCCCAGCAA CCACATGGTG
  GCTCACAACC ATCTATAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718658	NES09232714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487619					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718658	NES09232714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129578704 () rs orientation: forward

Symbol	Name	Function Class
Gm68938	predicted gene, 68938	within coordinates
Mir7016	microRNA 7016	340 bp upstream
Tmem39b	transmembrane protein 39b	within coordinates
Tssr43555	transcription start site region 43555	166 bp upstream