rs27487623 SNP Detail

Summary

• ID
  rs27487623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129578210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAC AGTAGCTGGC AGGCAACAAG
  Y
  GCTGCATGAG GATCACGGAG GTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37718662	NES09232721	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	T		T	C	C	C		C
ss45599451	mCV22371895	ABI	CRAMUS_MOUSE	f	SNP		C	C					T	C
ss147446207	ENSMUSSNP1705853	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321314608	CHEV_4_129361661	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27487623					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718662	NES09232721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129578210 () rs orientation: forward

Symbol	Name	Function Class
Gm68938	predicted gene, 68938	within coordinates
Mir7016	microRNA 7016	83 bp downstream
Tmem39b	transmembrane protein 39b	within coordinates
Tssr43555	transcription start site region 43555	318 bp downstream