rs27487630 SNP Detail

Summary

• ID
  rs27487630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129576860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAGTGT GGGTGAGGCA
  GGGCAACTAG CTCTTTTGGG TGGTCAGGAA ATAAGAGAGG CGAGAAAGAA CATTCCAGTG
  CATCATGGGG GAAGGCTAGA CATGGAAGTG CAGAAAGCCT GTGAGAACCC AGAGACCCGC
  TCTGGCTAGA GGCAATGTTA GGTTGCAGGA GAAAAGAAGG GCTCCCAGGT CCTCGCTCCT
  Y
  AGCCTGGCCG CTTTGCAAAA GGCTGTGATC TTAGTCAGAG GCCTGAGCGA GGTGCAGACA
  TGCAGTATTC TTCCTTTCTT TCTTGTGTTT TTGAGACAGG GTTTCTCTGT GCAGCCCTGG
  ATGTCCTGGA ACTCACTCTG TAGACTAGGC TGGTCTAGAA CTCAGAGATG CACTTCCCTC
  TGCTAAAGGC ATGCTCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718669	NES09232727	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487630					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718669	NES09232727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129576860 () rs orientation: forward

Symbol	Name	Function Class
Gm68938	predicted gene, 68938	1136 bp upstream
Mir7016	microRNA 7016	1433 bp downstream
Tmem39b	transmembrane protein 39b	within coordinates
Tssr43555	transcription start site region 43555	1668 bp downstream