rs27487631 SNP Detail

Summary

• ID
  rs27487631
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129576685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT AGTGTGGGTG AGGCAGGGCA
  M
  CTAGCTCTTT TGGGTGGTCA GGAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37718670	NES09232726	PERLEGEN	MM_PANEL2	f	SNP				C		A		A	A
ss45643164	mCV22371869	ABI	CRAMUS_MOUSE	f	SNP	C	C	A		C
ss147446156	ENSMUSSNP4439670	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss321314596	CHEV_4_129360136	CHEVERUD	SCREENING_POP	f	SNP							C			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27487631					SNP	C	C	A	C	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718670	NES09232726	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129576685 () rs orientation: forward

Symbol	Name	Function Class
Gm68938	predicted gene, 68938	1311 bp upstream
Mir7016	microRNA 7016	1608 bp downstream
Tmem39b	transmembrane protein 39b	within coordinates
Tssr43555	transcription start site region 43555	1843 bp downstream