rs27487638 SNP Detail

Summary

• ID
  rs27487638
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129575644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAGTTT ATATTTTTTA
  TTTTTGTGTT TTCTATCTGG GTAATGTTTG TCCTTCTGAA TCTGCCTAAA AGAGATGTAT
  CAGTTGTCTC AATGTCGACT GCTTGTGATA AAGAGCTGTT GGCCAATAGC TGGGGCAGAA
  AGTCTGAGGG CAGAAGTTCT AGGCAGAGTG ACACAGGGGA TGCAAGCAGA AGGGAGAATC
  W
  AAAGTGGACA CAGCAGGAGC TATGGGCCTA GAGAGATGGC TCAGCGGTTC AGAGCACCGA
  CTGCTCTTCC AGAGGTCTTG AGTTCAATCC CCAGCAACCA ATGGTGGCTC ACAACCACCT
  GTAATGAGGT CTGATGCCCT CTTCTGGTGT ACATGAGCAG CACACACGCA CACGCACACG
  GACACGGACA CGGACACGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718677	NES09232738	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487638					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718677	NES09232738	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129575644 () rs orientation: forward

Symbol	Name	Function Class
Tmem39b	transmembrane protein 39b	within coordinates