rs27487646 SNP Detail

Summary

• ID
  rs27487646
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129574461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCAGAG GACCTGGGTT
  CAATTCTGAG CACCGACATG GCCATTCACA CCTGTCTGTA ACTCAAAGAC CTGATACCCT
  CACACAGGCA TAATACATGT AGAAAAAAAT GCACATAAAA AAATCAGAGC TATTTGCTAT
  TCTCATGTGT TAATGCAGAA ATACCCCTAC AATGTCACCT TTTAAGGTTT AAGAGAAAAA
  S
  GTCAGACACC AATGAAGACA AAGCAGCTAG TCTCAGATGG TCCAGCCTCG GAGACTGCTT
  CAGACAGGAC TGCAGAAAAG CCCTACATTT TCCTAGCCTC AGATGACCCC ACAGAGTCTG
  GACAGCAAGT AAAACAGCCA GCTGTCTCAA GACTTGGCAA TTTTCAAATT TTCTTAGGGT
  CCCCAAAAGA TGCCTTTACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718685	NES09232739	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487646					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718685	NES09232739	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129574461 () rs orientation: forward

Symbol	Name	Function Class
Tmem39b	transmembrane protein 39b	within coordinates