rs27487649 SNP Detail

Summary

• ID
  rs27487649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129573577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGTAGATCT CTGAGTTTGA GGGCAGCCTG GTCTACAATA GTGAGTCTCA AGTCAGTCAG
  GAATAATAAT AATAATAATA ATAATAATAA TAATAAAATC TAACAATAAT AACAATGTGA
  GAGAAAGAGA GAGAGAGATT GAGAGAGAGA GAGAGAGAGA GAGAGAGAGC CAGCCCAAAT
  AAGAGCAGAG TTTCCTTCCA AAGCCCAAAG CCCTATGAGA TTCCAGGGAC CTCAAGGTTC
  TGGGCCAGAG ACAGACCTAC AGCTATCAGT AGCTCTCATG TAACTATAGT CCTGCTTCTT
  Y
  ACGGGTTCAC TTAAAAACAT ACAACCACAA GGATAACCCT CACAGATATA ACACTGAATT
  TAAGAAGCTA GACACAGGAG TGTTGATTTA TGACTTCCTT TGTATAAAGT TCTAGAAAAG
  GGAAAACTAA GCTATAGTGA AATAAAGGAG GGTGTGTGTG TGTGTGGGGG GGTGCTAGTG
  TGTGTAGGGT GTGTGCTAGT GAGTGCATGT GTCTGCAGCG TGGCTGAGGG AGGCTGGCCT
  CACTGGGCAG AGGGAGGATG AGGCTAGCAG GAGCAGCCAG CCTGCCTGCA AGCCCTGAGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718688	NES09232743	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	C	C	C	C	T	C	C
ss45646618	mCV22371538	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C
ss147446054	ENSMUSSNP5504467	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487649					SNP	C	C	T	T	T	C	T	C	C	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718688	NES09232743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129573577 () rs orientation: forward

Symbol	Name	Function Class
Tmem39b	transmembrane protein 39b	within coordinates