rs27493654 SNP Detail

Summary

• ID
  rs27493654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128976170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA ACCCAAGCCG CTAGCAGGTC
  R
  GGAAGGCCAC AGATGTCTGT AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37720676	NES09232096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G		G	G	G	G		A
ss321309912	CHEV_4_128759621	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27493654					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720676	NES09232096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128976170 () rs orientation: forward

Symbol	Name	Function Class
Rnf19b	ring finger protein 19B	within coordinates
Rr85452	regulatory region 85452	231 bp proximal
Rr102502	regulatory region 102502	within coordinates
Tssr39111	transcription start site region 39111	1871 bp downstream
Tssr39112	transcription start site region 39112	1856 bp downstream
Tssr39113	transcription start site region 39113	363 bp upstream
Tssr39114	transcription start site region 39114	455 bp upstream
Tssr39115	transcription start site region 39115	1504 bp upstream
Tssr39116	transcription start site region 39116	1670 bp upstream