rs27495544 SNP Detail

Summary

• ID
  rs27495544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118268758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG CCTATGCCAG ACACAGGGCT
  R
  CGAGTCTTCG GGGTGAGTCT GAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss37688765	NES09212087	PERLEGEN	MM_PANEL2	f	SNP	A	A	A			G			A
ss45712666	mCV22652627	ABI	CRAMUS_MOUSE	f	SNP	A	A		G	A
ss147307494	ENSMUSSNP3599731	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			A
ss321283073	CHEV_4_118084166	CHEVERUD	SCREENING_POP	f	SNP							A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs27495544					SNP	A	A	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37688765	NES09212087	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118268758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	1739 bp distal
Med8	mediator complex subunit 8	within coordinates
Rr598390	regulatory region 598390	1549 bp distal
Tssr38655	transcription start site region 38655	679 bp downstream
Tssr38656	transcription start site region 38656	175 bp upstream