rs27495545 SNP Detail

Summary

• ID
  rs27495545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118267701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCTTTC TGAGGTGAAC
  TGAACTTCCT GAAAAAAACA AAACAAAACT GTGTCAATGC CAACACCACA GAGTGACACG
  AGGGATTCTC ATCCACCCAA GGAAAGCAGC GCAGTGACAA TAAGCAGTCG TGAGGTAGGC
  AGGCCACATC TATTTTCCAG AAGAGGAACT GACAAAGAAG AGTGTGCAGA AACCTGAGCA
  Y
  GTTCCTATTA ACCCTACTGC AAATCTAAGA GAATGTTGTC TACTGGGAGA GGCAGTGTTT
  GAGAGCTGGG AGGAGGAGAG CATGGAATTA AAAAGGTGCA AGGCTAAGTG AGTTCGAAGC
  CAGTTTTGTT ACAAAGACAA ATCATGAGGT TTCAAGCCAA AGAGAATTAG GTCTGGTGCA
  ATGACCTTCT TGAAGGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37688766	NES09212086	PERLEGEN	MM_PANEL2	f	SNP	T	C	C			C	C		C		C
ss45603251	mCV22652899	ABI	CRAMUS_MOUSE	f	SNP	T	C		C	C
ss321283068	CHEV_4_118083109	CHEVERUD	SCREENING_POP	f	SNP								C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27495545					SNP	T	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37688766	NES09212086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118267701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	682 bp distal
Med8	mediator complex subunit 8	within coordinates
Rr398422	regulatory region 398422	1043 bp downstream
Rr598388	regulatory region 598388	1242 bp distal
Rr598389	regulatory region 598389	1128 bp distal
Rr598390	regulatory region 598390	492 bp distal
Szt2	SZT2 subunit of KICSTOR complex	1231 bp upstream
Tssr1279	transcription start site region 1279	1112 bp downstream
Tssr38654	transcription start site region 38654	1130 bp downstream
Tssr38655	transcription start site region 38655	366 bp upstream
Tssr38656	transcription start site region 38656	1232 bp upstream
Tssr43049	transcription start site region 43049	1222 bp upstream