rs27499197 SNP Detail

Summary

• ID
  rs27499197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114547023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGTTCT ACCAGAAGGT
  GGTTTTCCAA TGCATAGGGC CCGGAACACG GAAAGAATCT TCTGGAACAC GATGGGCAAG
  GGCCCATTGC TCTGGCTTCC ATAGGCCTTG GCATCTCCTC TGCCAATCAT GATACTGCCA
  CTCACTGTGA AGAGCAGTGT CCTACATATA CCCACATAGA GTAAGTACAA GCGCTGTGGA
  R
  CCAAAGCATT GCCTCTTCCC TGCTGGAGAT TCAATCCAAG AATTCTGGAG TTGGAGAAGG
  CCTTAAAGGC CATTTAGTTA AGCTCCTCCC AGACCAAATC TCTCCTCCAC TCCCTTGAGT
  GTAAAACTGG GACCAGTTCC TCATCAGGAT TCTATGCAGT TGTTCCCAGC CCACCCCAAG
  ATTCATCTAG GACAGGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37698818	NES09226993	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27499197					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37698818	NES09226993	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114547023 () rs orientation: forward

Symbol	Name	Function Class
Gm33655	predicted gene, 33655	1006 bp upstream
Rr597636	regulatory region 597636	1114 bp distal
Rr597637	regulatory region 597637	575 bp distal
Rr597638	regulatory region 597638	646 bp distal
Tssr42816	transcription start site region 42816	1094 bp upstream