rs27499199 SNP Detail

Summary

• ID
  rs27499199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114545723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGTGT GTTGCCAATT
  AGCTTTGCTG AGAGCACAGG CCCCATCCAT CACCCGCCTC TGGGTGGCTG TAACGGAGAC
  CTAATTTGTT TCATATGCCC TAGGCTCAGG CGTTCATCCT TGCCTCCAAC CTGCAGAGGA
  GCCCCTGTCC AAGGAGGAGA TGAATGACAA GAAAACCCAG GACAAGCCAG CGGGACTCCT
  R
  TCAGAAACTG CTCTGCTGTG GGTGGGAAGA TCCCAGCCCT CCCAGGCCCA CAGTTCCTCC
  CACAAGCTCC CCCACACCTC TCTCTCCTTC ACCCCTTCTC CCCTTTCACG ACCCAGAAGA
  CCCAAGACTC ACAAGCGGCC AGCGGGGCCC GAGTGGAGAA TGGAAAACTG CCTCTTCCTC
  CAGCTTCCCA GGGCTGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37698820	NES09227075	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27499199					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37698820	NES09227075	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114545723 () rs orientation: forward

Symbol	Name	Function Class
Gm33655	predicted gene, 33655	within coordinates
Rr597636	regulatory region 597636	within coordinates
Rr597637	regulatory region 597637	187 bp proximal
Rr597638	regulatory region 597638	633 bp proximal
Tssr42816	transcription start site region 42816	190 bp downstream