rs27499206 SNP Detail

Summary

• ID
  rs27499206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114544321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCTGGC TCCATGTGTA
  TGTCCTGACT CTCATCCCAG TACACATGGC AGAGTTAGGG ATCAGATATA GTGGGGATCA
  GATATAGTGG GGTGCCACAG ATAGAGTACA ACCAGCTTCC AAATGTGCCC TGCAGAACAA
  AACCCCTATC CCACCACCAC AGAGGCAGGG ACTAGCCTCA GGTCTGTGAT CTGCTTCCCT
  R
  AGCTGACTTA TGAAGATATG CTGAGACTTC CCCAAACTGA CCAGTCAGGC TAGGAGCCCT
  AGGAGCCCCA GAGCCCAAGC CATCTACAAA AGCAAGCAGA GTTCTATTTC CTCCCTAGTG
  AAAACTCCAG TTGTGGGGGC AGAAAACAAA GCAATCGAAT AAGCAAGCAC TTGGGTGAAA
  ATGAGCAGTG ACAGTAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37698827	NES09227068	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27499206					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37698827	NES09227068	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114544321 () rs orientation: forward

Symbol	Name	Function Class
Gm33655	predicted gene, 33655	within coordinates
Rr597634	regulatory region 597634	654 bp distal
Rr597635	regulatory region 597635	1495 bp distal
Rr597636	regulatory region 597636	1062 bp proximal
Rr597637	regulatory region 597637	1589 bp proximal
Tssr42816	transcription start site region 42816	1592 bp downstream