rs27499529 SNP Detail

Summary

• ID
  rs27499529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116803363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGATTC ACTCTGGCTT
  CTAAAGCTTT CTTCATTTAA ACCACTGGCC AGTTTCTTTC ATATAAAAGT GTTACAGAAC
  ATATTTCTTT AATTTTCTAG GTCAGACCCC TTCTTATCTA CAGGCAATAC ACAGACACAG
  TAGCCTTAGC TCTTCTCATA GTTGCTTAAA TAAAGTGTTC CATCCACTGT ATTTCAAGAA
  W
  GGTTGCCTCT GTATGCTGTA TAGTGATTCC TTGAGTACAT TTGTTACTTT TTGTTTAGAG
  CTACTCATTG TTCTCCCGTT CTGATTCTGG GAATTGCCAA ATTCATCAGA ACTTGCAGCG
  CCTGTACTCT TTCCAGTCAG GACAGACGGA TGTCCATCAC TTAAAGAGTC TGAGAATCTC
  CAGCTGGAGA TGAGTCTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693851	NES09211282	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27499529					SNP	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693851	NES09211282	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116803363 () rs orientation: forward

Symbol	Name	Function Class
Gm12998	predicted gene 12998	within coordinates
Rr598009	regulatory region 598009	1578 bp distal
Zswim5	zinc finger SWIM-type containing 5	Intron