rs27499530 SNP Detail

Summary

• ID
  rs27499530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116801467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG AACTCCACAC AGATGATTCA
  Y
  GTGCGGTGGT GAGACTGTCT TGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37693852	NES09211310	PERLEGEN	MM_PANEL2	f	SNP	T	T	T		T	C		T
ss321278556	CHEV_4_116616875	CHEVERUD	SCREENING_POP	f	SNP				C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27499530					SNP	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693852	NES09211310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116801467 () rs orientation: forward

Symbol	Name	Function Class
Gm12998	predicted gene 12998	1516 bp downstream
Rr598009	regulatory region 598009	within coordinates
Zswim5	zinc finger SWIM-type containing 5	within coordinates