rs27501880 SNP Detail

Summary

• ID
  rs27501880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119770383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATTTCAT AAGTATAGTT
  TTGCTACTTT TATGAGCTGT AACGTGAACG TTGGCTATGT GGGATAGCCG ATAAGTGGCT
  GGAAAGGTTC ATGACCCACA GGTTGAGATC CACTACTCTA GCAGCATTCT TAAGACTCAG
  TAGCTCTAGT TCTCTGTGTA GTGCCATGAT GGGGCTGGAC AGGACAGATC AGGAAGAACG
  R
  CATCACTCTG GAGACTGTGG AAGAAGGACA GAGGAAACCT CAGAGAGGAG GGGAGTGATG
  ATTCCCAAGG AATTACCTGT GGCAGGGGAG GGGACTTTTG CTCCTTGCTA TTGTGCCTTT
  ATGTGAGGTG TGTACATGTG TACGTGTGTG TGTGTGTGTC TGTGGTGTAC ACGTGTGGTG
  TGTGTATGTG ATAGGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714804	NES09204825	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27501880					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714804	NES09204825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119770383 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr91833	regulatory region 91833	1183 bp distal
Rr91834	regulatory region 91834	818 bp proximal
Rr91835	regulatory region 91835	1417 bp proximal
Rr96140	regulatory region 96140	1772 bp proximal
Rr102092	regulatory region 102092	583 bp distal
Tssr38760	transcription start site region 38760	1319 bp downstream