rs27501881 SNP Detail

Summary

• ID
  rs27501881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119770356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGGCTGGA AAGGTTCATG ACCCACAGGT TGAGATCCAC
  TACTCTAGCA GCATTCTTAA GACTCAGTAG CTCTAGTTCT CTGTGTAGTG CCATGATGGG
  R
  CTGGACAGGA CAGATCAGGA AGAACGACAT CACTCTGGAG ACTGTGGAAG AAGGACAGAG
  GAAACCTCAG AGAGGAGGGG AGTGATGATT CCCAAGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714805	NES09204824	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A	G		G	A	G	G	G	G	G	G	G
ss45625849	mCV22643250	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss147338418	ENSMUSSNP3147873	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27501881					SNP	G	G	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714805	NES09204824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119770356 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr91833	regulatory region 91833	1156 bp distal
Rr91834	regulatory region 91834	845 bp proximal
Rr91835	regulatory region 91835	1444 bp proximal
Rr96140	regulatory region 96140	1799 bp proximal
Rr102092	regulatory region 102092	556 bp distal
Tssr38760	transcription start site region 38760	1292 bp downstream