rs27501884 SNP Detail

Summary

• ID
  rs27501884
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119769091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCACCGTCT GGGTCTGCCC TAGCTCTGGC CTGGCCCAAA
  AGGAGGTGGA CTCAACATCT CTGCCTGGGG TCAGTTCTGT TCTGCGCTAA GACCAGAGGG
  S
  AGCCAGGATC CACACAGTCT GGGCACCCGC TGGCTGGCAC ACGAGGTGGG CAGCGAGCAT
  GGTGCGGGCT GTTGTACTCC TTCTCGTGGT GCCCTCGATC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37714808	NES09204853	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27501884					SNP	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714808	NES09204853	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119769091 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr91833	regulatory region 91833	within coordinates
Rr102092	regulatory region 102092	389 bp proximal
Tssr38760	transcription start site region 38760	27 bp downstream