rs27501885 SNP Detail

Summary

• ID
  rs27501885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119768518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCTGAC ACACAGCAGG
  GGATGCTGAG GCACCGTGCT GAAGGGTATC GCTGAGGTAA TCATGGCCTT CCAGGAAGAA
  TGCTTCTAAG GGAATGCTGC CAAAGAAGAG TGTTCTTGGC CAAGGAAACA GCATGGGCCG
  GGCTCCATGT CTTTGTCAAG GTCCAGTGGA GGGCATGCCT GCTGTCTCTT GTCAGCGTGG
  Y
  CCTTAGATGG CATGACCCAG TGGGTCTCTG GGGACTTGTG AAAACAGTTT GAGGGTAGAT
  GACTTTGCAC AGGTAAGGGG CCACAGGGAG ACATAATGCT GGATATGAGA GACTCACTCT
  ATTTACATGC CAGGGACAAG ACAGGGGTCA GGGCTTCTGT GGCCCTTGTG GTTGGAACTG
  TCAGTAGCTG GACCAGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37714809	NES09204851	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27501885					SNP	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714809	NES09204851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119768518 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr84724	regulatory region 84724	1918 bp distal
Rr91833	regulatory region 91833	within coordinates
Rr102092	regulatory region 102092	962 bp proximal
Tssr38760	transcription start site region 38760	538 bp upstream