rs27501886 SNP Detail

Summary

• ID
  rs27501886
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119768316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAAAGGA AAAGGAAGTT
  GACATGGAAA TCAAGGAAAA TACAATAGAA TCATGGGGCA GGGCAGGGCG AGACATAAGC
  CTGCTAGAGA TGATAAGTCA ATTTGGGTTA AGCAATGACA GCAAGAGGGA GAGGCTGGTC
  ACTTGCCGGT CATCTCATCC ATGGGGTCTA AGTGTACTAG ATGCAGAGAC TGAGAGGCTG
  M
  GGAGAGCTGA CACACAGCAG GGGATGCTGA GGCACCGTGC TGAAGGGTAT CGCTGAGGTA
  ATCATGGCCT TCCAGGAAGA ATGCTTCTAA GGGAATGCTG CCAAAGAAGA GTGTTCTTGG
  CCAAGGAAAC AGCATGGGCC GGGCTCCATG TCTTTGTCAA GGTCCAGTGG AGGGCATGCC
  TGCTGTCTCT TGTCAGCGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37714810	NES09204849	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27501886					SNP	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714810	NES09204849	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119768316 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr84724	regulatory region 84724	1716 bp distal
Rr91833	regulatory region 91833	84 bp proximal
Rr102092	regulatory region 102092	1164 bp proximal
Tssr38760	transcription start site region 38760	740 bp upstream