rs27501888 SNP Detail

Summary

• ID
  rs27501888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119767943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCATCCT ACATGTTGCT
  GTGTTCTGGC TCTGCTCCAT CATGTCTTTC TTGTTCTGAG GCCATCTTGA TGGCTATCCA
  AGCAGATGGG GGTGAAGTGA GGTGGCCAGT ATGGAGGGTG GCAGAGATGA GCCATTAGTC
  CTCACCTAGA GCCTTCTCCA TGATTGAGGA GATGGCAAGA AAACAGATAA GGTTCAGAAC
  Y
  GTGTGCTTCC CCAGGAAGGT GCAGACAGAG CCTCGAGGAC CTCCGGGAGG GAAGCCTTCC
  CATGCAGAGT GGCTGGGGAG AAGTCAGGTG TGTACAGTCT AAGTGGGAGT GGCTTGCTTG
  GTCATGCTTT TCTTACCTTA TTCCTGATAG AGATGTGAGA AGGTGCATTC TATATGAAAG
  GAAAAGGAAG TTGACATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37714812	NES09204843	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27501888					SNP	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714812	NES09204843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119767943 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr84724	regulatory region 84724	1343 bp distal
Rr91833	regulatory region 91833	457 bp proximal
Rr102092	regulatory region 102092	1537 bp proximal
Tssr38760	transcription start site region 38760	1113 bp upstream