rs27501890 SNP Detail

Summary

• ID
  rs27501890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119767596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTGAGT TCTATCTCTA
  GCACTGGAAG AAAGAAAAGA ACATAAGGAT TCGATTGGCT ATGTTCTGCA AAGCATTTGC
  TCTGACTGGC CTATCAGAGG ATGCCACCGT TGAATGCATC TGCATTTTTC TAAAGAACTG
  AGTTTTATGA ATTGAGCCAT TTAAAATGCC ATAAATAGTG TAGAAGAAGC TGCCTTCCAC
  R
  GTGAATTATT TGATGACCTA AAGGAATCAA TTTCCTTCTC TCTCCCTTTC CCGTTTTTTT
  TACGTGGGAG CTGTGTTTCA CAGACTGAAA GACCATAACA ATGAGTCCAG GATGAGTTTT
  GGACACTGGG GGGGGGGTCT GTTCTGCCTC CATCCTACAT GTTGCTGTGT TCTGGCTCTG
  CTCCATCATG TCTTTCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37714814	NES09204841	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27501890					SNP	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714814	NES09204841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119767596 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr84724	regulatory region 84724	996 bp distal
Rr91833	regulatory region 91833	804 bp proximal
Rr102092	regulatory region 102092	1884 bp proximal
Tssr38760	transcription start site region 38760	1460 bp upstream