rs27502489 SNP Detail

Summary

• ID
  rs27502489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117945391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGA AATCACCACA GGTGGTCCCA
  Y
  GGGAGCCTGG ACACTCATGA GCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37654126	NES09026623	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T		C	T		C	C	C		C
ss45209780	mCV23279369	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss147290714	ENSMUSSNP5846621	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320467719	CHEV_2_117940646	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27502489					SNP	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37654126	NES09026623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117945391 () rs orientation: forward

Symbol	Name	Function Class
Rr55415	regulatory region 55415	within coordinates
Thbs1	thrombospondin 1	within coordinates
Tssr19531	transcription start site region 19531	1847 bp downstream
Tssr19532	transcription start site region 19532	1805 bp downstream
Tssr19533	transcription start site region 19533	194 bp downstream