rs27502490 SNP Detail

Summary

• ID
  rs27502490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117945074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG AACCCGAAGG GTAGGCTGGT
  R
  GGATCAGCTG TTGAAACCTT GAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37654127	NES09026622	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	G		A	G		G	A	G		A
ss147290700	ENSMUSSNP6312647	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
ss320467716	CHEV_2_117940329	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27502490					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37654127	NES09026622	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117945074 () rs orientation: forward

Symbol	Name	Function Class
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	1984 bp distal
Rr55415	regulatory region 55415	within coordinates
Thbs1	thrombospondin 1	within coordinates
Tssr19530	transcription start site region 19530	1928 bp downstream
Tssr19531	transcription start site region 19531	1530 bp downstream
Tssr19532	transcription start site region 19532	1488 bp downstream
Tssr19533	transcription start site region 19533	91 bp upstream