rs27502491 SNP Detail

Summary

• ID
  rs27502491
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117944472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCTGT TTCAGAATGG
  GGTACTCCCT GTGCCCTTAG GAAAGTAACT TGTATCAAAT GTACCTAGCA GTTTTAATAG
  GGCATGAAAA GGATACTTTG TCAGTATTTG AGTCCCTGGG CAGGGTGTTC TGGGTGCTTT
  CAGTATGGAT CTAAGGCAAG ACATGAATAA CAGTCCAGTC ATGTGCCTCT GGGACTCCTT
  M
  CTTGCCTTAA CTTTCAGATA TTTTTTTTTC TTACAAGCGT GGCTTTGAAC GCCCACATTA
  ACTCTTTGTC ACTGGAGAGT ATCATGTCCT CCAGACTTGG GATCAAATTC CATTTCCTGT
  GTACCCCAAG CAGCCTGAAA ACTGGATTCT TTGTAAAATG CTCCAGTTGG CAGAAGACAC
  AATTAAGATT TTGAAGTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37654128	NES09026621	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27502491					SNP	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37654128	NES09026621	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117944472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	1808 bp distal
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	1382 bp distal
Rr55415	regulatory region 55415	within coordinates
Thbs1	thrombospondin 1	within coordinates
Tssr19529	transcription start site region 19529	1601 bp downstream
Tssr19530	transcription start site region 19530	1326 bp downstream
Tssr19531	transcription start site region 19531	928 bp downstream
Tssr19532	transcription start site region 19532	886 bp downstream
Tssr19533	transcription start site region 19533	693 bp upstream