rs27502493 SNP Detail

Summary

• ID
  rs27502493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117943887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACACTCC TGGCTGTGGA
  ACGGAAAGAC AACACTGGCC AGATCTTCAG TGTGGTCTCC AACGGCAAAG CTGGCACCCT
  GGACCTGAGC CTGAGCCTGC CAGGGAAGCA ACAAGTGGTG TCAGTGGAGG AAGCTCTCCT
  GGCCACTGGC CAGTGGAAGA GCATCACGCT GTTTGTTCAA GAGGACCGGG CTCAACTCTA
  Y
  ATAGACTGTG ATAAGATGGA GAGCGCGGAG CTGGATGTAC CCATCCAGAG CATCTTCACC
  AGGGATCTGG CCAGCGTTGC CAGGCTCCGA GTTGCAAAGG GAGATGTCAA TGACAATTTT
  CAGGTAAATC TTCTTACCTG TCACAAGGGC TATGTGGAAT TAATATCGGT AGACTAAAAA
  TGATTCTCAA ATGTAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37654130	NES09026673	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27502493					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37654130	NES09026673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117943887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	1223 bp distal
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	797 bp distal
Rr55415	regulatory region 55415	within coordinates
Thbs1	thrombospondin 1	within coordinates
Tssr19527	transcription start site region 19527	1891 bp downstream
Tssr19528	transcription start site region 19528	1507 bp downstream
Tssr19529	transcription start site region 19529	1016 bp downstream
Tssr19530	transcription start site region 19530	741 bp downstream
Tssr19531	transcription start site region 19531	343 bp downstream
Tssr19532	transcription start site region 19532	301 bp downstream
Tssr19533	transcription start site region 19533	1278 bp upstream