rs27502496 SNP Detail

Summary

• ID
  rs27502496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117943600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACGAAGG GGCCCCGGTC GCCGACTGGT GAAGGGCCAA
  GATCTATCCA GCCCCGCCTT CCGCATTGAG AATGCCAACC TGATCCCCGC TGTGCCGGAT
  R
  ACAAGTTCCA AGACCTACTG GACGCTGTGT GGGCCGACAA AGGCTTCATC TTCCTGGCTT
  CCTTGAGGCA GATGAAGAAG ACCCGGGGCA CACTCCTGGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37654133	NES09026670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27502496					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37654133	NES09026670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117943600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	936 bp distal
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	510 bp distal
Gm13986	predicted gene 13986	1917 bp upstream
Rr55415	regulatory region 55415	within coordinates
Rr397201	regulatory region 397201	1793 bp downstream
Thbs1	thrombospondin 1	within coordinates
Tssr19527	transcription start site region 19527	1604 bp downstream
Tssr19528	transcription start site region 19528	1220 bp downstream
Tssr19529	transcription start site region 19529	729 bp downstream
Tssr19530	transcription start site region 19530	454 bp downstream
Tssr19531	transcription start site region 19531	56 bp downstream
Tssr19532	transcription start site region 19532	14 bp downstream
Tssr19533	transcription start site region 19533	1565 bp upstream