rs27502497 SNP Detail

Summary

• ID
  rs27502497
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117942627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA GGCTGCAGAT GATCAGCGCT
  W
  CTCCTCATCT CCTACTCTTC CCCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37654134	NES09026669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A		A	T	T	A		T
ss147290679	ENSMUSSNP1405614	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320467712	CHEV_2_117937882	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27502497					SNP	T	T	T	T	T	T	A	T	A	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37654134	NES09026669	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117942627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	within coordinates
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	303 bp proximal
Gm13986	predicted gene 13986	944 bp upstream
Rr55415	regulatory region 55415	within coordinates
Rr397201	regulatory region 397201	820 bp downstream
Thbs1	thrombospondin 1	within coordinates
Tssr19527	transcription start site region 19527	631 bp downstream
Tssr19528	transcription start site region 19528	247 bp downstream
Tssr19529	transcription start site region 19529	218 bp upstream
Tssr19530	transcription start site region 19530	508 bp upstream
Tssr19531	transcription start site region 19531	903 bp upstream
Tssr19532	transcription start site region 19532	945 bp upstream