rs27502498 SNP Detail

Summary

• ID
  rs27502498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117942412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAGTCTC CCCCTTCACT
  TTCAGCCCGA GAGCTGTGCG CCAAGCAGCA GGGGGCGGAG AAATGAACCC GTCCGTCCCC
  GTCCCCCGCC CCCGCCCCCG AGAACCCTCC CCCCTCCCTG CTTCCTGCCT CTTTAAAAGG
  TCCTGGGCTC CTCAGTCAAG CCAGCCACTG CCTGGAGTCA GCCAGCCTCA TCGGACTTCT
  R
  CAGGCAATCG CGAAGCTGCT ATCCAGTTCT GCCACGGTCT CTCCCGGCGC ACCGGCAGTC
  TCAGCGTCTT CACCGGACTC AGCGTCCTTG TCCTTCACTT CACCTTTGCC ACCTCTCCGG
  GTTACTGAGC CCCGGTGCAC ACAGGTAAAC CTCCCGCCTC TGCGGAGCAC CTGGCCGGCC
  ACCTCAAAGC CCCAGGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37654135	NES09026668	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27502498					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37654135	NES09026668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117942412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	within coordinates
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	518 bp proximal
Gm13986	predicted gene 13986	729 bp upstream
Rr55415	regulatory region 55415	within coordinates
Rr397201	regulatory region 397201	605 bp downstream
Thbs1	thrombospondin 1	within coordinates
Tssr19527	transcription start site region 19527	416 bp downstream
Tssr19528	transcription start site region 19528	32 bp downstream
Tssr19529	transcription start site region 19529	433 bp upstream
Tssr19530	transcription start site region 19530	723 bp upstream
Tssr19531	transcription start site region 19531	1118 bp upstream
Tssr19532	transcription start site region 19532	1160 bp upstream