rs27503262 SNP Detail

Summary

• ID
  rs27503262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129227511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGGTTCA ATTCCTAGCC
  CTCAAACCAA AACAACTCTT TACTCCAAAT TTCTATTACC TGCTGAACCC CATCAGCCTC
  ATAATTGAAT TCTGCACGTA TCTTAACTCT TGAGTTTCCA AAGAATTCAG TACATTTTTG
  CCAAATTTAC ATTAGTAATT ACCCACATCC ACCATCTTTG GATTGCCACT TGTTTCAGCA
  R
  GCCAGTCTGG TAGTTCATGC TGACAGACTT TCCCCTTCAT TTTGTGTATG CAATTCGCTG
  TAGGGTCCCA GCCCCCCCCC CTTTCTGTGC TGAGGATCAA AGTCCCCATC AGTAGGTCTC
  AATCACTAAA CATTACAACC CTTCTGCCCC ACCTCCCACC AAGCTCTAAA ACCTCACACT
  ACTGCTGAAA ACACTCGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss37719989	NES09228969	PERLEGEN	MM_PANEL2	f	SNP	G	G	A			G
ss321312024	CHEV_4_129010962	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs27503262					SNP	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719989	NES09228969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129227511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	888 bp proximal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	1641 bp upstream
Rr600200	regulatory region 600200	1603 bp proximal
Rr600201	regulatory region 600201	1642 bp proximal
Tssr39141	transcription start site region 39141	1875 bp upstream
Tssr43492	transcription start site region 43492	1525 bp downstream
Tssr43493	transcription start site region 43493	1579 bp downstream
Tssr43494	transcription start site region 43494	1606 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	1814 bp upstream