rs27503268 SNP Detail

Summary

• ID
  rs27503268
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129567828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCACAT CAACACACAG
  AGCCGGGGTT ACGTCCAATC TTGCCAATTC TAACCAAATG CCTGGCCGAT AAAGTGAAAC
  AACTCAAAAG TCAAATTCTA TGACTTGAGG AAAAGGAATA CTGTTATCAC AATAATCAAC
  CTCCTTATCT CACTTATCTC CAAAATCGTT CTGCCCCATC TGTCTTTAAA ACCAGAGACA
  K
  CGGGGCTGGT GAGATGGCTC AGGGGGTAAG AGCACTAACT ACTCTTCAAG AGGTCCTGAG
  TTCAAATCCC AGCAACCACA TGGTGGCTCA CAACCATCCG TAGTAACATA TGATGCTCTC
  TTCTGGTGTC TAAAGCTACA ATGTACTTAC ATATAATAAA TAAATTCTTA AAAAACAAAC
  AAACCACAGA AAGGACCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718707	NES09232765	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27503268					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718707	NES09232765	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129567828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	934 bp distal
Kpna6	karyopherin subunit alpha 6	1268 bp upstream
Rr85538	regulatory region 85538	573 bp proximal
Rr85539	regulatory region 85539	1773 bp proximal
Rr100093	regulatory region 100093	427 bp distal
Tssr43552	transcription start site region 43552	1327 bp upstream
Tssr43553	transcription start site region 43553	1261 bp upstream
Tssr43554	transcription start site region 43554	1242 bp upstream