rs27503269 SNP Detail

Summary

• ID
  rs27503269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129567781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAT AATCAACCTC CTTATCTCAC
  Y
  TATCTCCAAA ATCGTTCTGC CCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37718708	NES09232764	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	T	C	C	T		T	C	C	T		C
ss147445914	ENSMUSSNP1452903	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss321314554	CHEV_4_129351232	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27503269					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718708	NES09232764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129567781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	887 bp distal
Kpna6	karyopherin subunit alpha 6	1221 bp upstream
Rr85538	regulatory region 85538	620 bp proximal
Rr85539	regulatory region 85539	1820 bp proximal
Rr100093	regulatory region 100093	380 bp distal
Tssr43552	transcription start site region 43552	1280 bp upstream
Tssr43553	transcription start site region 43553	1214 bp upstream
Tssr43554	transcription start site region 43554	1195 bp upstream