rs27503275 SNP Detail

Summary

• ID
  rs27503275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129566060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTGGCT TTGGTCTCTC
  TACCACTGCG AAGGCTGTCA CTGAGTCTAG CCGAACCACC CCATTCCTGC GCCGACTGGG
  ACATTTTCCT GGCCTTCAAA GGCCCAAGCT CTGCTGGACC CGGCCGGCCC TTGGTTACCG
  GGCCGGAGCT GGCCTGCCCT GGGTCTCCTC TCCAGAGGAC TCTACCCTCT ACGTAGGCAG
  Y
  TAGGACTTCA CTTGGTTCAG AAGCCCGGCG TCCAAAAGCC CGAGGAAGCA GGCTCTCCGC
  GGCCAGGCCT GCTGCTGGAG CCCGGAGCCC GGCCCCCGGA TCCACGGCAG GCGCAGGGCG
  AGAGGGCAGG GCTCTGCTTA CCCCGGGAAG CGCGAGCTCT GACCCGAGGC CACCACGTGG
  GGACAGCCCA GGACGCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718714	NES09232769	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27503275					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718714	NES09232769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129566060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	within coordinates
Kpna6	karyopherin subunit alpha 6	within coordinates
Rr100093	regulatory region 100093	within coordinates
Rr398522	regulatory region 398522	484 bp downstream
Tssr43552	transcription start site region 43552	430 bp downstream
Tssr43553	transcription start site region 43553	445 bp downstream
Tssr43554	transcription start site region 43554	515 bp downstream