rs27503276 SNP Detail

Summary

• ID
  rs27503276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129565723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA CTGGTTTCAC TTCTGAATTC
  R
  AAGACCATCA TCGTATTCTT TTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37718715	NES09232768	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G	A	A	G		G	A	A	G		A
ss45710244	mCV22371502	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss147445886	ENSMUSSNP6384933	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321314548	CHEV_4_129349174	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27503276					SNP	A	A	A	A	A	A	G	G	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718715	NES09232768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129565723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	167 bp proximal
Kpna6	karyopherin subunit alpha 6	within coordinates
Rr85537	regulatory region 85537	1723 bp distal
Rr100093	regulatory region 100093	within coordinates
Rr398522	regulatory region 398522	147 bp downstream
Tssr43552	transcription start site region 43552	767 bp downstream
Tssr43553	transcription start site region 43553	782 bp downstream
Tssr43554	transcription start site region 43554	852 bp downstream