rs27503277 SNP Detail

Summary

• ID
  rs27503277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129565712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA AATTACCAAT ACTGGTTTCA
  Y
  TTCTGAATTC GAAGACCATC ATCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37718716	NES09232767	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T	T	C		C	T	T	T		T
ss45665434	mCV22371501	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss147445882	ENSMUSSNP6382039	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321314547	CHEV_4_129349163	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27503277					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718716	NES09232767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129565712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	178 bp proximal
Kpna6	karyopherin subunit alpha 6	within coordinates
Rr398522	regulatory region 398522	136 bp downstream
Tssr43552	transcription start site region 43552	778 bp downstream
Tssr43553	transcription start site region 43553	793 bp downstream
Tssr43554	transcription start site region 43554	863 bp downstream