rs27503279 SNP Detail

Summary

• ID
  rs27503279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129564930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCGCCTG CCTCTGCTCC
  CCAAGTGCTG GGATTAAAGG CGTGCGCCAC CACCCATCTA ATGCCTTAAA TCTTAGAGGC
  TGCTGTGAAG TAAAATGTGA AAGAATGTCG TTCCTGGCTG ACTCTCATCA GCTATGTTAG
  CTCCTTCAAG CCTGTTTCTC AATCTCTAAA AAAACGTCTC ACAGACGATG CCTTTCCCTC
  Y
  AGGGCTCCAG TTACCTCCCA GAATCAATCT ATACTTTCCA GAGGATCTGG AAGTGTAGAG
  TGCTTTAGGG AAAAGAACCG CTCGCTGTAT TCAGGGTGGG AAGAATGCTG TTACATTGTT
  TGCAGAGTTC TTGCTAGGTT ACACATACTC CCTTCCTAGA GATGTGAAGG CTCAGAAATG
  GAGGAACGTA GGGCTTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718718	NES09232772	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27503279					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718718	NES09232772	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129564930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	960 bp proximal
Kpna6	karyopherin subunit alpha 6	within coordinates
Rr398522	regulatory region 398522	345 bp upstream
Tssr43552	transcription start site region 43552	1560 bp downstream
Tssr43553	transcription start site region 43553	1575 bp downstream
Tssr43554	transcription start site region 43554	1645 bp downstream