rs27503280 SNP Detail

Summary

• ID
  rs27503280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129564508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA AAGGGATTCC TCAAACTACC
  R
  AGGACTACAC ACTGTGATTA AATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37718719	NES09232775	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	A	A	G		A
ss147445865	ENSMUSSNP55535	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss321314543	CHEV_4_129347959	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27503280					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718719	NES09232775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129564508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	1382 bp proximal
Kpna6	karyopherin subunit alpha 6	within coordinates
Rr85536	regulatory region 85536	1308 bp distal
Rr85537	regulatory region 85537	508 bp distal
Rr96442	regulatory region 96442	1359 bp distal
Rr100093	regulatory region 100093	292 bp proximal
Rr398522	regulatory region 398522	767 bp upstream
Tssr43552	transcription start site region 43552	1982 bp downstream
Tssr43553	transcription start site region 43553	1997 bp downstream