rs27503441 SNP Detail

Summary

• ID
  rs27503441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129510053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCAGGGC TTGCCCACAC
  AGCTCCTCCT GCATGGCAGC CAAGAATCCA AGGAAAACTT TTATTCTCCA GGATCCTCCC
  ACCCTACTTA CCCCAAGAGG AGGTGAAATT TGGTTTAAGT CCCAGGCAGA AGGTAAAAAG
  GCATGTCCTT CTTTCTCCTA TCGTACCAGC TCAGCCCTCT AGCTTCTCTT AGCCTGAGAT
  Y
  TACTGATGGC CAGGGGCAAG GGCAGGAGAC AGGTGGTACC AGGGAGGCAG GACAAGGGCC
  TGCTTCCCTT GTCATTTTTC ACAGCATCTG CTTTTGGGAA CCCTTCCTCT CCTGGATCCC
  CAGATCTTTC CTGATGCTCC TGCTTTCCGG TATCTGCCCT TCCCCTAGTC CTGTCTTGAG
  GAAGACAAGT TCTCCAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718885	NES09232932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27503441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718885	NES09232932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129510053 () rs orientation: forward

Symbol	Name	Function Class
Iqcc	IQ motif containing C	within coordinates
Rr600294	regulatory region 600294	1861 bp distal
Tssr43540	transcription start site region 43540	1980 bp upstream