rs27503444 SNP Detail

Summary

• ID
  rs27503444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129508467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGCCTGGA GCCTGTTACC CAAGGAGGAT GGCTGACTTC
  TTGGCAGCCC TGCTCGCTGG TTCTGGGGAT GATGGTCCAG GTCAGTGGGA GGTGACCCAG
  M
  CAGCCCAGAA TCTGTCCTGA TCAGAGGCAG GAGATAAAAG AAGAAGGGCT AAGAACTTTC
  TAAAGCCTGG TCTGACATTC AGGTAACTGA GGAAAGCATC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37718888	NES09232954	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27503444					SNP	C	C	C	C	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718888	NES09232954	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129508467 () rs orientation: forward

Symbol	Name	Function Class
Dcdc2b	doublecortin domain containing 2b	417 bp upstream
Iqcc	IQ motif containing C	452 bp downstream
Rr600294	regulatory region 600294	275 bp distal
Tssr43540	transcription start site region 43540	394 bp upstream