rs27503456 SNP Detail

Summary

• ID
  rs27503456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129507565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC AACTTGCAGA ATTGTCCCCA
  Y
  AGGTTTGTCC TGGCTGTGAT GGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37718900	NES09232942	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	C		C	T	T	C		T
ss147444402	ENSMUSSNP6462397	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321314265	CHEV_4_129291016	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27503456					SNP	T	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718900	NES09232942	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129507565 () rs orientation: forward

Symbol	Name	Function Class
Dcdc2b	doublecortin domain containing 2b	within coordinates
Iqcc	IQ motif containing C	1354 bp downstream
Rr600294	regulatory region 600294	475 bp proximal
Tssr43540	transcription start site region 43540	489 bp downstream