rs27503460 SNP Detail

Summary

• ID
  rs27503460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129506763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGAATG TAGATATCTG
  AGCCTGACTT AGGGTCTCTG AGTACCGAGT AAGGCTGTAA ATTCAGGTGG ACTTTAGGTA
  CACCACGGTT GGAGGCCAAA GGCAAGCATG AAGTATCTTA CTTTAGTCCA GAAATTCCCC
  AGTCATGCAT GAGGTGACTT TTTTTTTTTT GTATAATAGT CAAAGAAGCG ACTTTTTCAA
  R
  ATTACACAGG AAGTGACTGA GTCCAGACAC CTTGTTCCTT CCCTATAGTA AACTCCTCCA
  CTGAGCTCTC AGAGCAGACG TGGAGGCTCA GGCTGAGTTG GAAGCTCTGA TCTCACTGTT
  CTCCTGCTAA GGAAGACAGT CTCATCTTGC ACAGTCTCAT CTTGCAGAGA TGACCCTAAT
  CTAACAGGAG TTTCAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37718904	NES09232959	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27503460					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718904	NES09232959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129506763 () rs orientation: forward

Symbol	Name	Function Class
Dcdc2b	doublecortin domain containing 2b	within coordinates
Rr600294	regulatory region 600294	1277 bp proximal
Tssr43540	transcription start site region 43540	1291 bp downstream