rs27505906 SNP Detail

Summary

• ID
  rs27505906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119350768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCAGAG GACAACTTTC
  AGGATCTGGT TCTCCTGAAA CCCACCATGT GGATCAAAGT CAGGCTAGGC AGCAAGTGCT
  TTTACTCTCT GAGCCATCTC ACAGCTCCTA GCTAGTCATT TCTAAATAAC TATGGGGTTG
  ACTTTAGCCA GTTGTGTTTC CAGCTCTTTA AAACATCTTT TTGAAATCAT CATCGCCGCC
  R
  CCATCATCAT CATCATTTTG GTTTTTTCAA TATAGGGTTT CTCTGGGTAA CCTTGTCTCC
  CTGTAGCCCT GCTTCCCTGT AGCCCTGTGT AGTTTCTGTC CTGGAACTCA CTCTGTAAAT
  GTGATGGTTT GTATATTCTC AGAGTGGCAC CATCTGGAGG TGTGGCCTGG TTGGAATAGG
  TGTGTCACTG TGGGTGTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37684239	NES09206225	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27505906					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684239	NES09206225	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119350768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14703	CpG island 14703	448 bp distal
Rimkla	ribosomal modification protein rimK-like family member A	973 bp upstream
Rr598598	regulatory region 598598	453 bp distal
Tssr43121	transcription start site region 43121	1010 bp upstream
Tssr43122	transcription start site region 43122	953 bp upstream