rs27509973 SNP Detail

Summary

• ID
  rs27509973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117913645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGAAAG CAGCCGCGGC
  AGCTGCTCAT TCACGGTTAC ATCACTAGCA CCACGCCTGA CTCTCAAGCC ACTGCGGAAG
  GACAGTTTCT AGAGAAATGC CCAGACCACA AGCCCTTTGG AAATATGTTT ACCAAGAACC
  ATTGGGCAGT GAGCTGGATG GGCTTCCTGA AAGGATCCAG AGGCTAGTAT CCTGCATCTC
  R
  GGTAAGGGCA GATCATGTGC TCCGAAATCC ACCAAGAAAA AGGCAGGACA GCTTGCTCTT
  TACAGAAAGG TGGGTGCACC ATCAGGCCTC TTGATGAGCA GAGTCTAACT CAGGAGTGCT
  GCCCTTTTAT CTCGGTGTTT TGTGTCTGCT TCATCTCCGT GAGATGTGTT CCTCCTTTTA
  AGCCCTCGGC CAAGGTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690117	NES09217712	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27509973					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690117	NES09217712	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117913645 () rs orientation: forward

Symbol	Name	Function Class
Gm70335	predicted gene, 70335	1090 bp upstream
Rr598294	regulatory region 598294	1407 bp distal
Rr598295	regulatory region 598295	758 bp proximal
Rr598296	regulatory region 598296	1461 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	within coordinates
Tssr43029	transcription start site region 43029	1693 bp upstream