rs27509976 SNP Detail

Summary

• ID
  rs27509976
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117912405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGGGGT GTGAGCTCCC
  AAGCAGCCAA AGCAAAGAGA GAAAGACAGT TCCAGAGCTC GGTGTCCTTA GTGCATTCTT
  CTTGTCATTC ACAGAGTCAG GAAATGTTCG TTGGGCATCT ACTATGTACT AGAATACTAT
  GATACGGTAG TCAGCAGCAA CAACAGCAAC ATGTGGTCTG TGCTCCCGTG GGTCTCCTTG
  M
  CTTTCATCTT GGAAAGAGAC CTTATCAGAG GACAAACTAT TTAGCTAGAC ACCGAGAAGA
  ACAACTCAGA GAAGCCGTTG CGGTCGGTGC TAGGGACCAG CCTGAGGGCA CTGCGCATAA
  TAAGCTTCTC TGGAGAAGCT GGACCTTGGG CTAGGGCTGA TGGGGATGCT GAGGGTTAAA
  GCCAACAAGA ATGGGATGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690120	NES09217786	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27509976					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690120	NES09217786	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117912405 () rs orientation: forward

Symbol	Name	Function Class
Rr598293	regulatory region 598293	968 bp distal
Rr598294	regulatory region 598294	167 bp distal
Rr598295	regulatory region 598295	1998 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	within coordinates
Tssr43029	transcription start site region 43029	453 bp upstream