rs27509979 SNP Detail

Summary

• ID
  rs27509979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117912279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA GAGCTCGGTG TCCTTAGTGC
  R
  TTCTTCTTGT CATTCACAGA GTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37690123	NES09217783	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		G	A	G	G		A
ss45609128	mCV24294421	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss147298641	ENSMUSSNP404998	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321281384	CHEV_4_117727687	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27509979					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690123	NES09217783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117912279 () rs orientation: forward

Symbol	Name	Function Class
Rr598293	regulatory region 598293	842 bp distal
Rr598294	regulatory region 598294	41 bp distal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	within coordinates
Tssr43029	transcription start site region 43029	327 bp upstream