rs27509982 SNP Detail

Summary

• ID
  rs27509982
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117911655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTACCAG TTGTGACAGC CCTGGCTGGC CTAGAACTCC
  TCATGTCCAT CAGGCAGGCC TCAGGCTCAG AGACCCACCT GCCTCTGCCA GTGCCATCGT
  M
  CCCAGCTCAG TGTCTGCCTG GAAAACAACT GGAAAAGTGT TTCCCGCTGG GACCTTCTGC
  TCCCTCCATG GCAAAGCCCT GGGGCCTTTT CCATAATTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690126	NES09217780	PERLEGEN	MM_PANEL2	f	SNP	A		C	A		A		C	C	A	C	C
ss45567129	mCV24294432	ABI	CRAMUS_MOUSE	f	SNP	A	A			C		A
ss147298629	ENSMUSSNP4338466	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27509982					SNP	A	A	C	A	C	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690126	NES09217780	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117911655 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598293	regulatory region 598293			218 bp distal
Rr598294	regulatory region 598294			231 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr43029	transcription start site region 43029			276 bp downstream