rs27509984 SNP Detail

Summary

• ID
  rs27509984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117911161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGATTGT GTATGAGGTC
  AGCGGAAGAG ACTAACTACC CTCCAAAGGC CAGCTACGGT CTTTCTGGGA TTCAAGCTGA
  GACAAAGCTT CACCGAATCC TATAGGGATA TCCTTCCCCT GGTGCGAAGT TGTTCTGAGC
  TCCCCAGGGG TAGCAAGCTG AAGAATCAAA GCAGTTGTCT GTCCGTCCTT CCTGCCCTGC
  Y
  AACAAGAACT GAGGTATGGG GCAGGTGGAC TGTGTCTGAT GAGGACAACC ACCTTCTGGC
  CTCAGTGACT CGGCTCAGAA CAGTGTGTGC CAAACAGCAA GGTCTATACA GTAAACACCG
  GAAGGGAGGG CGTGTCTGCC TGTGACTGGT GCAGGCAGGT GCAGCGCTCC CTCCAGGAGT
  TCTTCACCAG AGCACGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37690128	NES09217778	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27509984					SNP	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690128	NES09217778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117911161 () rs orientation: forward

Symbol	Name	Function Class
Gm54253	predicted gene, 54253	1628 bp downstream
Rr598293	regulatory region 598293	within coordinates
Rr598294	regulatory region 598294	725 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	within coordinates
Tssr43029	transcription start site region 43029	770 bp downstream