rs27509987 SNP Detail

Summary

• ID
  rs27509987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117910579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTAACCT GGGGTTCCTT
  TAAGATCTTC CTTGCCTGTC CAGTCTGTTA AAGTGACTTC TCATGCATGC CTCAGCATTG
  TGGTGGAGGG GCCCCATGTG GCATGGGATA GTGGCACACA TGGTCAGCAA AGGCCAAGTG
  TGAGCTTTTT AGCCAGGTAG GGATGGATGG GCCCTGAACA GGTGACCGTG TGTTCCAGGT
  Y
  AGTTAAAGAA ATCAAAACTG AGCCGGGCAT GCTACAGAGA AGTTTCAGGC CAGCAATAAG
  ACCCTATCTC AAGCCGGGCA TGGTAGTGCA CACCTTTAAT CCCAGCACTT GGGAGGCAGA
  GGCAGGCGGA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA AAGTGAGTTC CAGGACAGCC
  AGGGCTATAC AGAGAAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37690131	NES09217836	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C		C	C	T	C		C
ss147298621	ENSMUSSNP4359499	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321281381	CHEV_4_117725987	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27509987					SNP	T	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37690131	NES09217836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117910579 () rs orientation: forward

Symbol	Name	Function Class
Gm54253	predicted gene, 54253	1046 bp downstream
Rr598293	regulatory region 598293	537 bp proximal
Rr598294	regulatory region 598294	1307 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	within coordinates
Tssr43029	transcription start site region 43029	1352 bp downstream