rs27510489 SNP Detail

Summary

• ID
  rs27510489
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118857932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACACACA CACACACACA
  CACACAAACG TGCACATGCG AATGCACACT GTGGGGTGTG AGCACACAAT CAAATAATAA
  ATATATTTTT AAAAATACTT TTTTCAACTA CAGTTAGGGT CACTAAAAGT ACACCGCCAT
  CAAACGTGCC TTGGCATTCC CAGAGTTCTG GATCCCTGCT GGGTCTGGCC AGCATGTACT
  S
  TCATCTCCCC TTCTCCCTCT GGAAATTTCT CTCTTCTCTG GGGAGGGTGG GGGGGGGCTT
  CTTTTCCCTT TCTATTAATT TATTTATTTA TTCACTTTAC ATCCCAGCCA CAGGCCCTTC
  TTCCACTTCC CCCTCACACA GCCCTTCCCC ATCCCCTCTT CCTCTTCACC TCTGAGGAGG
  AGCTCCCTGC CCCCCCACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37686021	NES09200000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27510489					SNP	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686021	NES09200000	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118857932 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	1277 bp downstream
Gm12862	predicted gene 12862	250 bp upstream
Rr398425	regulatory region 398425	882 bp downstream
Rr598452	regulatory region 598452	1292 bp distal
Rr598453	regulatory region 598453	261 bp distal
Rr598454	regulatory region 598454	160 bp distal
Rr598455	regulatory region 598455	959 bp proximal