rs27510493 SNP Detail

Summary

• ID
  rs27510493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118857476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTATAT CCAGCTTTAT
  AAGCACTTCC TTCCAGGAGG ATGTGGGCAG AAACTTACAA GACTTTGTAA TGTCCAAATT
  CCCCATCCCA AAACGTCACT GTAAAAATCA ACAAAGCCTC CTGTGGCTGC GCTAAACAGA
  AATAGTTTAC AGAGGGGCTG CTGCCCGGTC ACTGGAGGCG CACAAGAGCC CTTCAAAGGC
  Y
  CTGACGTGCA GGAAGGGAAG CAAAACCTGT AAGGTCCACA GCAGTGATCT CTGAACATCA
  ACCTGGTGTC ACTCAGGAAA TCCACGTAGT GTGAATCTAA CACTGTCAGC CTCAGTGATG
  CCGCAGGTCC CCATCAGACT TGATTTCGAG GGCTACTGAG GAGGCTCAGT GGGTGTTTGT
  GCTGCAAGCC GTGGTTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37686025	NES09200032	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27510493					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686025	NES09200032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118857476 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	821 bp downstream
Gm12862	predicted gene 12862	within coordinates
Rr398425	regulatory region 398425	426 bp downstream
Rr598452	regulatory region 598452	836 bp distal
Rr598453	regulatory region 598453	within coordinates
Rr598454	regulatory region 598454	196 bp proximal
Rr598455	regulatory region 598455	1415 bp proximal